Detailed information of SNP:
|
SNP ID:
sf0718993208(Gbrowse)
Chromosome: chr07 Position: 18993208 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 62.93% | 37.07% |
| All Indica | 774 | 86.18% | 13.82% |
| All Japonica | 496 | 23.59% | 76.41% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 367 | 89.65% | 10.35% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 196 | 71.94% | 28.06% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718993208 | C->T | INTERGENIC | None |