Detailed information of SNP:
|
SNP ID:
sf0718993627(Gbrowse)
Chromosome: chr07 Position: 18993627 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 68.19% | 31.81% |
| All Indica | 787 | 91.87% | 8.13% |
| All Japonica | 496 | 24.80% | 75.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 202 | 82.18% | 17.82% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718993627 | A->G | INTERGENIC | None |