Detailed information of SNP:
|
SNP ID:
sf0718994846(Gbrowse)
Chromosome: chr07 Position: 18994846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 93.21% | 6.79% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 492 | 82.52% | 17.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 92 | 32.61% | 67.39% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718994846 | G->A | INTERGENIC | None |