Detailed information of SNP:
|
SNP ID:
sf0718995424(Gbrowse)
Chromosome: chr07 Position: 18995424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 93.81% | 6.19% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 484 | 85.12% | 14.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 87 | 47.13% | 52.87% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718995424 | C->T | LOC_Os07g31930(LOC_Os07g31930.1) | INTRON |