Detailed information of SNP:
|
SNP ID:
sf0718998592(Gbrowse)
Chromosome: chr07 Position: 18998592 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 95.06% | 4.94% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718998592 | T->A | INTERGENIC | None |