Detailed information of SNP:
|
SNP ID:
sf0718998761(Gbrowse)
Chromosome: chr07 Position: 18998761 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1270 | 64.25% | 35.75% |
| All Indica | 782 | 89.90% | 10.10% |
| All Japonica | 372 | 25.27% | 74.73% |
| Aus | 65 | 0.00% | 100.00% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 197 | 83.76% | 16.24% |
| Temperate Japonica | 232 | 37.50% | 62.50% |
| Tropical Japonica | 87 | 2.30% | 97.70% |
| Japonica Intermediate | 53 | 9.43% | 90.57% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718998761 | C->T | INTERGENIC | None |