Detailed information of SNP:
|
SNP ID:
sf0718999922(Gbrowse)
Chromosome: chr07 Position: 18999922 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 66.27% | 33.73% |
| All Indica | 792 | 91.41% | 8.59% |
| All Japonica | 496 | 23.59% | 76.41% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 206 | 79.13% | 20.87% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0718999922 | A->G | INTERGENIC | None |