Detailed information of SNP:
|
SNP ID:
sf0719000082(Gbrowse)
Chromosome: chr07 Position: 19000082 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 50.42% | 49.58% |
| All Indica | 794 | 14.48% | 85.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 9.60% | 90.40% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 206 | 30.58% | 69.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719000082 | G->A | INTERGENIC | None |