Detailed information of SNP:
|
SNP ID:
sf0719000785(Gbrowse)
Chromosome: chr07 Position: 19000785 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 87.23% | 12.77% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 80.28% | 19.72% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719000785 | G->A | INTERGENIC | None |