Detailed information of SNP:
|
SNP ID:
sf0719002840(Gbrowse)
Chromosome: chr07 Position: 19002840 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 55.63% | 44.37% |
| All Indica | 749 | 21.50% | 78.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 14.70% | 85.30% |
| Indica II | 202 | 13.37% | 86.63% |
| Indica Intermediate | 200 | 41.50% | 58.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719002840 | G->A | INTERGENIC | None |