Detailed information of SNP:
|
SNP ID:
sf0719004663(Gbrowse)
Chromosome: chr07 Position: 19004663 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1262 | 69.26% | 30.74% |
| All Indica | 646 | 42.26% | 57.74% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 287 | 35.89% | 64.11% |
| Indica II | 175 | 29.14% | 70.86% |
| Indica Intermediate | 184 | 64.67% | 35.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719004663 | C->A | INTERGENIC | None |