Detailed information of SNP:
|
SNP ID:
sf0719005175(Gbrowse)
Chromosome: chr07 Position: 19005175 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 51.87% | 48.13% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719005175 | G->A | LOC_Os07g31950(LOC_Os07g31950.1) | Non-Synonymous SNP |