Detailed information of SNP:
|
SNP ID:
sf0719005647(Gbrowse)
Chromosome: chr07 Position: 19005647 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 51.52% | 48.48% |
| All Indica | 793 | 16.39% | 83.61% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 205 | 36.10% | 63.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719005647 | A->G | LOC_Os07g31950(LOC_Os07g31950.1) | INTRON |