Detailed information of SNP:
|
SNP ID:
sf0719005709(Gbrowse)
Chromosome: chr07 Position: 19005709 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 66.81% | 33.19% |
| All Indica | 796 | 92.21% | 7.79% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719005709 | A->T | LOC_Os07g31950(LOC_Os07g31950.1) | INTRON |