Detailed information of SNP:
|
SNP ID:
sf0719006574(Gbrowse)
Chromosome: chr07 Position: 19006574 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 86.68% | 13.32% |
| All Indica | 797 | 93.60% | 6.40% |
| All Japonica | 492 | 78.86% | 21.14% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 330 | 95.76% | 4.24% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719006574 | A->G | INTERGENIC | None |