Detailed information of SNP:
|
SNP ID:
sf0719006690(Gbrowse)
Chromosome: chr07 Position: 19006690 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 51.38% | 48.62% |
| All Indica | 795 | 88.18% | 11.82% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719006690 | T->A | INTERGENIC | None |