Detailed information of SNP:
|
SNP ID:
sf0719006761(Gbrowse)
Chromosome: chr07 Position: 19006761 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.14% | 46.86% |
| All Indica | 798 | 83.33% | 16.67% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719006761 | G->A | LOC_Os07g31960(LOC_Os07g31960.1) | UTR_3_PRIME |