Detailed information of SNP:
|
SNP ID:
sf0719011275(Gbrowse)
Chromosome: chr07 Position: 19011275 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1277 | 93.11% | 6.89% |
| All Indica | 711 | 89.17% | 10.83% |
| All Japonica | 449 | 98.44% | 1.56% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 338 | 94.08% | 5.92% |
| Indica II | 186 | 95.70% | 4.30% |
| Indica Intermediate | 187 | 73.80% | 26.20% |
| Temperate Japonica | 314 | 98.09% | 1.91% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719011275 | T->C | LOC_Os07g31970(LOC_Os07g31970.1) | Non-Synonymous SNP |