Detailed information of SNP:
|
SNP ID:
sf0719012114(Gbrowse)
Chromosome: chr07 Position: 19012114 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1271 | 57.83% | 42.17% |
| All Indica | 752 | 85.24% | 14.76% |
| All Japonica | 412 | 3.16% | 96.84% |
| Aus | 62 | 82.26% | 17.74% |
| Indica I | 351 | 84.62% | 15.38% |
| Indica II | 204 | 85.78% | 14.22% |
| Indica Intermediate | 197 | 85.79% | 14.21% |
| Temperate Japonica | 320 | 0.94% | 99.06% |
| Tropical Japonica | 43 | 9.30% | 90.70% |
| Japonica Intermediate | 49 | 12.24% | 87.76% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 32 | 56.25% | 43.75% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719012114 | T->C | LOC_Os07g31970(LOC_Os07g31970.1) | Synonymous |