Detailed information of SNP:
|
SNP ID:
sf0719015090(Gbrowse)
Chromosome: chr07 Position: 19015090 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1278 | 74.65% | 25.35% |
| All Indica | 674 | 61.13% | 38.87% |
| All Japonica | 485 | 99.18% | 0.82% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 298 | 62.08% | 37.92% |
| Indica II | 187 | 52.94% | 47.06% |
| Indica Intermediate | 189 | 67.72% | 32.28% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719015090 | T->C | LOC_Os07g31970(LOC_Os07g31970.1) | Synonymous |