Detailed information of SNP:
|
SNP ID:
sf0719015109(Gbrowse)
Chromosome: chr07 Position: 19015109 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 64.68% | 35.32% |
| All Indica | 792 | 91.92% | 8.08% |
| All Japonica | 493 | 16.23% | 83.77% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 91 | 51.65% | 48.35% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719015109 | A->C | LOC_Os07g31970(LOC_Os07g31970.1) | Non-Synonymous SNP |