Detailed information of SNP:
|
SNP ID:
sf0719017490(Gbrowse)
Chromosome: chr07 Position: 19017490 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 62.24% | 37.76% |
| All Indica | 790 | 87.72% | 12.28% |
| All Japonica | 496 | 16.13% | 83.87% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 371 | 85.44% | 14.56% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719017490 | A->G | INTERGENIC | None |