Detailed information of SNP:
|
SNP ID:
sf0719029298(Gbrowse)
Chromosome: chr07 Position: 19029298 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 94.03% | 5.97% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 474 | 84.39% | 15.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 73 | 39.73% | 60.27% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719029298 | A->T | INTERGENIC | None |