Detailed information of SNP:



SNP ID: sf0719038743(Gbrowse)

Chromosome: chr07

Position: 19038743
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 64.81% 35.19%
All Indica799 91.49% 8.51%
All Japonica497 15.69% 84.31%
Aus67 100.00% 0.00%
Indica I375 98.13% 1.87%
Indica II213 97.65% 2.35%
Indica Intermediate211 73.46% 26.54%
Temperate Japonica335 2.99% 97.01%
Tropical Japonica94 44.68% 55.32%
Japonica Intermediate68 38.24% 61.76%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 73.17% 26.83%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0719038743 C->T INTERGENIC None