Detailed information of SNP:
|
SNP ID:
sf0719038743(Gbrowse)
Chromosome: chr07 Position: 19038743 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.81% | 35.19% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719038743 | C->T | INTERGENIC | None |