Detailed information of SNP:
|
SNP ID:
sf0719039029(Gbrowse)
Chromosome: chr07 Position: 19039029 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 54.47% | 45.53% |
| All Indica | 790 | 82.41% | 17.59% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 371 | 83.83% | 16.17% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719039029 | G->A | INTERGENIC | None |