Detailed information of SNP:
|
SNP ID:
sf0719039392(Gbrowse)
Chromosome: chr07 Position: 19039392 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.34% | 35.66% |
| All Indica | 797 | 90.84% | 9.16% |
| All Japonica | 496 | 15.52% | 84.48% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719039392 | C->T | INTERGENIC | None |