Detailed information of SNP:
|
SNP ID:
sf0719039530(Gbrowse)
Chromosome: chr07 Position: 19039530 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.63% | 10.37% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719039530 | T->A | INTERGENIC | None |