Detailed information of SNP:
|
SNP ID:
sf0719039982(Gbrowse)
Chromosome: chr07 Position: 19039982 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 86.31% | 13.69% |
| All Indica | 780 | 94.62% | 5.38% |
| All Japonica | 495 | 85.25% | 14.75% |
| Aus | 60 | 10.00% | 90.00% |
| Indica I | 366 | 95.08% | 4.92% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719039982 | C->T | INTERGENIC | None |