Detailed information of SNP:
|
SNP ID:
sf0719040125(Gbrowse)
Chromosome: chr07 Position: 19040125 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 83.90% | 16.10% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719040125 | G->A | INTERGENIC | None |