Detailed information of SNP:
|
SNP ID:
sf0719041127(Gbrowse)
Chromosome: chr07 Position: 19041127 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 52.44% | 47.56% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 495 | 0.61% | 99.39% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719041127 | A->T | INTERGENIC | None |