Detailed information of SNP:
|
SNP ID:
sf0719041151(Gbrowse)
Chromosome: chr07 Position: 19041151 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 83.35% | 16.65% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719041151 | C->T | INTERGENIC | None |