Detailed information of SNP:
|
SNP ID:
sf0719041216(Gbrowse)
Chromosome: chr07 Position: 19041216 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 51.31% | 48.69% |
| All Indica | 798 | 83.46% | 16.54% |
| All Japonica | 488 | 6.97% | 93.03% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 326 | 1.53% | 98.47% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719041216 | A->G | INTERGENIC | None |