Detailed information of SNP:
|
SNP ID:
sf0719041413(Gbrowse)
Chromosome: chr07 Position: 19041413 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 51.46% | 48.54% |
| All Indica | 798 | 17.29% | 82.71% |
| All Japonica | 488 | 99.18% | 0.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 10.43% | 89.57% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 326 | 99.08% | 0.92% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719041413 | C->T | INTERGENIC | None |