Detailed information of SNP:
|
SNP ID:
sf0719043167(Gbrowse)
Chromosome: chr07 Position: 19043167 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.74% | 41.26% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719043167 | G->A | INTERGENIC | None |