Detailed information of SNP:
|
SNP ID:
sf0719046968(Gbrowse)
Chromosome: chr07 Position: 19046968 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 66.36% | 33.64% |
| All Indica | 786 | 98.47% | 1.53% |
| All Japonica | 495 | 10.10% | 89.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 35.87% | 64.13% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719046968 | T->C | LOC_Os07g32020(LOC_Os07g32020.1) | UTR_3_PRIME |