Detailed information of SNP:
|
SNP ID:
sf0719047042(Gbrowse)
Chromosome: chr07 Position: 19047042 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.46% | 35.54% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719047042 | G->A | LOC_Os07g32020(LOC_Os07g32020.1) | UTR_3_PRIME |