Detailed information of SNP:
|
SNP ID:
sf0719048428(Gbrowse)
Chromosome: chr07 Position: 19048428 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.94% | 40.06% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719048428 | C->T | INTERGENIC | None |