Detailed information of SNP:
|
SNP ID:
sf0719049757(Gbrowse)
Chromosome: chr07 Position: 19049757 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.72% | 42.28% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719049757 | G->C | INTERGENIC | None |