Detailed information of SNP:
|
SNP ID:
sf0719049942(Gbrowse)
Chromosome: chr07 Position: 19049942 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.04% | 41.96% |
| All Indica | 798 | 88.47% | 11.53% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719049942 | G->T | INTERGENIC | None |