Detailed information of SNP:
|
SNP ID:
sf0719050170(Gbrowse)
Chromosome: chr07 Position: 19050170 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 64.24% | 35.76% |
| All Indica | 794 | 90.81% | 9.19% |
| All Japonica | 496 | 15.32% | 84.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719050170 | G->A | INTERGENIC | None |