Detailed information of SNP:
|
SNP ID:
sf0719051883(Gbrowse)
Chromosome: chr07 Position: 19051883 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 62.51% | 37.49% |
| All Indica | 792 | 88.51% | 11.49% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 94.58% | 5.42% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719051883 | C->T | INTERGENIC | None |