Detailed information of SNP:
|
SNP ID:
sf0719054994(Gbrowse)
Chromosome: chr07 Position: 19054994 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.61% | 36.39% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719054994 | G->C | INTERGENIC | None |