Detailed information of SNP:
|
SNP ID:
sf0719055568(Gbrowse)
Chromosome: chr07 Position: 19055568 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 61.55% | 38.45% |
| All Indica | 797 | 89.08% | 10.92% |
| All Japonica | 493 | 14.81% | 85.19% |
| Aus | 22 | 95.45% | 4.55% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 65 | 35.38% | 64.62% |
| Group VI/Aromatic | 1 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719055568 | C->T | INTERGENIC | None |