Detailed information of SNP:
|
SNP ID:
sf0719057663(Gbrowse)
Chromosome: chr07 Position: 19057663 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.53% | 46.47% |
| All Indica | 798 | 82.96% | 17.04% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719057663 | C->T | LOC_Os07g32050(LOC_Os07g32050.1) | INTRON |