Detailed information of SNP:



SNP ID: sf0719057968(Gbrowse)

Chromosome: chr07

Position: 19057968
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1419 97.39% 2.61%
All Indica799 99.62% 0.38%
All Japonica497 93.96% 6.04%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 71.28% 28.72%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0719057968 A->G LOC_Os07g32050(LOC_Os07g32050.1) INTRON