Detailed information of SNP:
SNP ID:
sf0719057968(Gbrowse)
Chromosome: chr07 Position: 19057968 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 97.39% | 2.61% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 93.96% | 6.04% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 71.28% | 28.72% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0719057968 | A->G | LOC_Os07g32050(LOC_Os07g32050.1) | INTRON |