Detailed information of SNP:
|
SNP ID:
sf0719059392(Gbrowse)
Chromosome: chr07 Position: 19059392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 89.73% | 10.27% |
| All Indica | 797 | 93.35% | 6.65% |
| All Japonica | 473 | 98.73% | 1.27% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 71 | 97.18% | 2.82% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719059392 | C->T | INTERGENIC | None |