Detailed information of SNP:
|
SNP ID:
sf0719062102(Gbrowse)
Chromosome: chr07 Position: 19062102 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 60.65% | 39.35% |
| All Indica | 774 | 95.99% | 4.01% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 57 | 98.25% | 1.75% |
| Indica I | 367 | 95.91% | 4.09% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 197 | 95.94% | 4.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719062102 | G->T | INTERGENIC | None |