Detailed information of SNP:
|
SNP ID:
sf0719064507(Gbrowse)
Chromosome: chr07 Position: 19064507 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.95% | 35.05% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 496 | 15.93% | 84.07% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719064507 | T->G | LOC_Os07g32070(LOC_Os07g32070.1) | INTRON |