Detailed information of SNP:
|
SNP ID:
sf0719070520(Gbrowse)
Chromosome: chr07 Position: 19070520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.42% | 10.58% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719070520 | C->T | LOC_Os07g32090(LOC_Os07g32090.1) | Synonymous |