Detailed information of SNP:
|
SNP ID:
sf0719074942(Gbrowse)
Chromosome: chr07 Position: 19074942 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 96.30% | 3.70% |
| All Indica | 790 | 95.32% | 4.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719074942 | G->A | LOC_Os07g32110(LOC_Os07g32110.1) | Synonymous |